These warnings can be safely ignored. They are false positives due to Arsenal's compatibility check being too naive. My mods leverage the same entry loader (Wwise) and their script allows them to be loaded alongside each other using the same entry point. Arsenal only sees that the two mods use the same loader and immediately marks them as incompatible, which is incorrect.
I appreciate everyone bringing the issue to my attention. I hope this clears up some of the confusion.